PoplarV1, Main, Exploration, bibRecord, 000502

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.

Identifieur interne : 000502 ( Main/Exploration ); précédent : 000501; suivant : 000503

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.

Auteurs : Mircea Podar [Pays-Bas] ; Joel Turner [États-Unis] ; Leah H. Burdick [États-Unis] ; Dale A. Pelletier [États-Unis]

Source :

Microbiology resource announcements [ 2576-098X ] ; 2020.

RBID : pubmed:32616646

Abstract

Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

DOI: 10.1128/MRA.00617-20
PubMed: 32616646
PubMed Central: PMC7330248

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000215
to stream Main, to step Curation: 000215

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Complete Genome Sequence of the Novel <i>Roseimicrobium</i>
 sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.</title>
<author><name sortKey="Podar, Mircea" sort="Podar, Mircea" uniqKey="Podar M" first="Mircea" last="Podar">Mircea Podar</name>
<affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA podarm@ornl.gov.</nlm:affiliation>
<country wicri:rule="url">Pays-Bas</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<wicri:noRegion>Tennessee</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Turner, Joel" sort="Turner, Joel" uniqKey="Turner J" first="Joel" last="Turner">Joel Turner</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Burdick, Leah H" sort="Burdick, Leah H" uniqKey="Burdick L" first="Leah H" last="Burdick">Leah H. Burdick</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32616646</idno>
<idno type="pmid">32616646</idno>
<idno type="doi">10.1128/MRA.00617-20</idno>
<idno type="pmc">PMC7330248</idno>
<idno type="wicri:Area/Main/Corpus">000215</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000215</idno>
<idno type="wicri:Area/Main/Curation">000215</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000215</idno>
<idno type="wicri:Area/Main/Exploration">000215</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Complete Genome Sequence of the Novel <i>Roseimicrobium</i>
 sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.</title>
<author><name sortKey="Podar, Mircea" sort="Podar, Mircea" uniqKey="Podar M" first="Mircea" last="Podar">Mircea Podar</name>
<affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA podarm@ornl.gov.</nlm:affiliation>
<country wicri:rule="url">Pays-Bas</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<wicri:noRegion>Tennessee</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Turner, Joel" sort="Turner, Joel" uniqKey="Turner J" first="Joel" last="Turner">Joel Turner</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Burdick, Leah H" sort="Burdick, Leah H" uniqKey="Burdick L" first="Leah H" last="Burdick">Leah H. Burdick</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Microbiology resource announcements</title>
<idno type="eISSN">2576-098X</idno>
<imprint><date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><i>Roseimicrobium</i>
 sp. strain ORNL1 is a soil bacterium that belongs to the phylum <i>Verrucomicrobia</i>
 and was isolated from the rhizosphere of a forest Eastern cottonwood tree, <i>Populus deltoides</i>
, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32616646</PMID>
<DateRevised><Year>2020</Year>
<Month>09</Month>
<Day>28</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2576-098X</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>9</Volume>
<Issue>27</Issue>
<PubDate><Year>2020</Year>
<Month>Jul</Month>
<Day>02</Day>
</PubDate>
</JournalIssue>
<Title>Microbiology resource announcements</Title>
<ISOAbbreviation>Microbiol Resour Announc</ISOAbbreviation>
</Journal>
<ArticleTitle>Complete Genome Sequence of the Novel <i>Roseimicrobium</i>
 sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">e00617-20</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1128/MRA.00617-20</ELocationID>
<Abstract><AbstractText><i>Roseimicrobium</i>
 sp. strain ORNL1 is a soil bacterium that belongs to the phylum <i>Verrucomicrobia</i>
 and was isolated from the rhizosphere of a forest Eastern cottonwood tree, <i>Populus deltoides</i>
, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.</AbstractText>
<CopyrightInformation>Copyright © 2020 Podar et al.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Podar</LastName>
<ForeName>Mircea</ForeName>
<Initials>M</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0003-2776-0205</Identifier>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA podarm@ornl.gov.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Turner</LastName>
<ForeName>Joel</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Burdick</LastName>
<ForeName>Leah H</ForeName>
<Initials>LH</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pelletier</LastName>
<ForeName>Dale A</ForeName>
<Initials>DA</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2020</Year>
<Month>07</Month>
<Day>02</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Microbiol Resour Announc</MedlineTA>
<NlmUniqueID>101728794</NlmUniqueID>
<ISSNLinking>2576-098X</ISSNLinking>
</MedlineJournalInfo>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year>
<Month>7</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2020</Year>
<Month>7</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2020</Year>
<Month>7</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">32616646</ArticleId>
<ArticleId IdType="pii">9/27/e00617-20</ArticleId>
<ArticleId IdType="doi">10.1128/MRA.00617-20</ArticleId>
<ArticleId IdType="pmc">PMC7330248</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):1982-1986</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23041636</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2016 Aug 19;44(14):6614-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27342282</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2013 Dec 13;8(12):e82443</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24349285</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Methods Mol Biol. 2012;908:153-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22843398</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27422831</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2012 Jun 15;28(12):1647-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22543367</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Microbiol. 2015 Jul 30;6:779</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26284056</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2020 Apr;14(4):999-1014</Citation>
<ArticleIdList><ArticleId IdType="pubmed">31953507</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2018 Dec 20;13(12):e0208852</Citation>
<ArticleIdList><ArticleId IdType="pubmed">30571782</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Commun. 2018 Nov 30;9(1):5114</Citation>
<ArticleIdList><ArticleId IdType="pubmed">30504855</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Biotechnol. 2018 Jul 6;36(7):566-569</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29979655</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2008 Apr;74(8):2461-70</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18296538</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Pays-Bas</li>
<li>États-Unis</li>
</country>
<region><li>Tennessee</li>
</region>
</list>
<tree><country name="Pays-Bas"><noRegion><name sortKey="Podar, Mircea" sort="Podar, Mircea" uniqKey="Podar M" first="Mircea" last="Podar">Mircea Podar</name>
</noRegion>
</country>
<country name="États-Unis"><region name="Tennessee"><name sortKey="Turner, Joel" sort="Turner, Joel" uniqKey="Turner J" first="Joel" last="Turner">Joel Turner</name>
</region>
<name sortKey="Burdick, Leah H" sort="Burdick, Leah H" uniqKey="Burdick L" first="Leah H" last="Burdick">Leah H. Burdick</name>
<name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000502 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000502 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:32616646
   |texte=   Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:32616646" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020

	Serveur d'exploration sur le peuplier
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur le peuplier

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.

Source :

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki